Error messages

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Revision as of 20:55, 22 November 2011
Popinet (Talk | contribs)
(Nicholson Canyon viscous3D parallel runs)
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EmilyMLane (Talk | contribs)

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Line 103: Line 103:
from /usr/lib64/libgfs3D-1.3.so.2 from /usr/lib64/libgfs3D-1.3.so.2
#16 0x0000000000402d3f in main () #16 0x0000000000402d3f in main ()
 +</pre>
 +
 +
 +=== Parallel runs of solid block scenario ===
 +
 +The following was generated using the debugging suggestion above. This was running on a 8 core modelling computer. I also have trouble with this on turbine. It looks like it might be the topics module that causes this issue.
 +
 +<pre>
 +GNU gdb (GDB) SUSE (7.2-3.3)
 +Copyright (C) 2010 Free Software Foundation, Inc.
 +License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
 +This is free software: you are free to change and redistribute it.
 +There is NO WARRANTY, to the extent permitted by law. Type "show copying"
 +and "show warranty" for details.
 +This GDB was configured as "x86_64-suse-linux".
 +For bug reporting instructions, please see:
 +<http://www.gnu.org/software/gdb/bugs/>...
 +Reading symbols from /usr/bin/gerris3D...(no debugging symbols found)...done.
 +[New Thread 8923]
 +Missing separate debuginfo for /usr/lib64/libgfs3D-1.3.so.2
 +Try: zypper install -C "debuginfo(build-id)=73a7126c1de17dbebbdedf735fcdf79ba81ff692"
 +Missing separate debuginfo for /usr/lib64/libgts-0.7.so.5
 +Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
 +Missing separate debuginfo for /lib64/libglib-2.0.so.0
 +Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
 +Missing separate debuginfo for /lib64/libm.so.6
 +Try: zypper install -C "debuginfo(build-id)=5ac64cd348d3581ec2a223ee70f42e73cad029cc"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0
 +Try: zypper install -C "debuginfo(build-id)=92fde4dc891cdbfd56717d6e7ec36a6f4aa2a31a"
 +Missing separate debuginfo for /lib64/libpthread.so.0
 +Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
 +Missing separate debuginfo for /lib64/libc.so.6
 +Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
 +Missing separate debuginfo for /lib64/libgmodule-2.0.so.0
 +Try: zypper install -C "debuginfo(build-id)=691c1fb49f55b61d6fb9d852c1e45bf31070c968"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
 +Try: zypper install -C "debuginfo(build-id)=29f39043b1c76e1d6969f0b0b175a401a06e502c"
 +Missing separate debuginfo for /lib64/libpcre.so.0
 +Try: zypper install -C "debuginfo(build-id)=7d0cbd7e39faac70a4bcd0d67af1cec8f764a6a8"
 +Missing separate debuginfo for /lib64/librt.so.1
 +Try: zypper install -C "debuginfo(build-id)=e3e6773e84151cf7b70051b1e22f0254ede44f08"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
 +Try: zypper install -C "debuginfo(build-id)=1499fff7ece09deb87f0a902261be3576cbde3c2"
 +Missing separate debuginfo for /lib64/ld-linux-x86-64.so.2
 +Try: zypper install -C "debuginfo(build-id)=b1d398a5cb1609e7ac1c51a26588e87fc20f753c"
 +Missing separate debuginfo for /lib64/libdl.so.2
 +Try: zypper install -C "debuginfo(build-id)=9a8d0811525ec7a152dca9e109292adca81857c1"
 +Missing separate debuginfo for /lib64/libutil.so.1
 +Try: zypper install -C "debuginfo(build-id)=5751266e22e9f2cbca821b110e87ecd37e70e7b4"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
 +Try: zypper install -C "debuginfo(build-id)=25b93b44c7fd7e72c41e420612362a6cb2949985"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=104134640094fca2fd5426b0701563fd4b28ad4a"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
 +Try: zypper install -C "debuginfo(build-id)=8c8456fad88d46693aff1255de3a96264ad05aa0"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
 +Try: zypper install -C "debuginfo(build-id)=ca47041d00b1b46225eaa1a23131adccfd743ea4"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
 +Try: zypper install -C "debuginfo(build-id)=2c083e1336ae3b9d74d1933ed9b9531e2e776cf2"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=ec544d770190052f4b90feb4c55bf8f69a1feb7d"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
 +Try: zypper install -C "debuginfo(build-id)=260fc9c133e905e57d79b0e3605befe631c1aec7"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
 +Try: zypper install -C "debuginfo(build-id)=5fb1d4dd9f47a3ff043ae76516e62ed091fca612"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
 +Try: zypper install -C "debuginfo(build-id)=ad0a31c3ba7fd44f88f80c068d293a9d7c664d0e"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=68263ec466fbd29f4d1efbc008e31301ca324b0f"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
 +Try: zypper install -C "debuginfo(build-id)=acd24af09910454519e83b8e015317ef76fff0bf"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
 +Try: zypper install -C "debuginfo(build-id)=c3ba7c1237f91dbe125fd4bfb480c25a981b845e"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=316df880c94eb69b9ff62486d3af0fdf99b3a584"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
 +Try: zypper install -C "debuginfo(build-id)=26187d03cdd941fed9ea27a8b974fa32c607e278"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
 +Try: zypper install -C "debuginfo(build-id)=97ad3de1a6593d8a7d491d6a687d4f9e83990abc"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
 +Try: zypper install -C "debuginfo(build-id)=0faa776e3ac158e25193330e494fa738cde2791f"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
 +Try: zypper install -C "debuginfo(build-id)=ab37174a7c071f220b248b8d047a502fcb8af2d7"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
 +Try: zypper install -C "debuginfo(build-id)=e380eca4000b35a84021c891bc7d5b9e79919566"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
 +Try: zypper install -C "debuginfo(build-id)=fc4c8c5e82df290ded5c31b98d04f2e8052a6204"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
 +Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
 +Try: zypper install -C "debuginfo(build-id)=e858f53cfd31c5e090ddda5dba145d6aa21317a9"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
 +Try: zypper install -C "debuginfo(build-id)=f1779fa302f3e8f76555e14b90eae9d20a464c64"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
 +Try: zypper install -C "debuginfo(build-id)=d2b5b9126217a97fed2d1fcdc3fdc56662c76c1e"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=dd9c3fd18ec53ff040186974413fa714e0d14595"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
 +Try: zypper install -C "debuginfo(build-id)=7096d727d63a3e7e4d72481f7dddf323857b93c4"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=5686c3b85d9c6f85b38ccac80e04dc1eba981a1d"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
 +Try: zypper install -C "debuginfo(build-id)=8c24fa35a8984354b9381327e2e2dc2da1c5d9a2"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
 +Try: zypper install -C "debuginfo(build-id)=2773c3c524f8635d70f4ff08855eb6e094274575"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
 +Try: zypper install -C "debuginfo(build-id)=2bd824902bb872b55024dad0261d1be23334ad96"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
 +Try: zypper install -C "debuginfo(build-id)=6397de58e423f648020148746c98dbab9749b9f0"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
 +Try: zypper install -C "debuginfo(build-id)=c4d011e296f92d65ea76471f1901311f33f63dec"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
 +Try: zypper install -C "debuginfo(build-id)=88373c4dadca1063131f581ee21d8c672671a4ce"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
 +Try: zypper install -C "debuginfo(build-id)=8464f81d8f801d9f30a92cd097a5224d2fac9e5b"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
 +Try: zypper install -C "debuginfo(build-id)=76728eccfc87527f96d2b1f87ec74095c81ddb0b"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
 +Try: zypper install -C "debuginfo(build-id)=3d1102b650cf8583aca37593de1d9c18d6099c77"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
 +Try: zypper install -C "debuginfo(build-id)=172c9d0fe932827db1e6b07910c3cf2a5288bd9b"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
 +Try: zypper install -C "debuginfo(build-id)=ffdc00b701595119aa282de493e4088c71a0ab53"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
 +Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
 +Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
 +Try: zypper install -C "debuginfo(build-id)=6b43dd821c6413a7241cf7df46e03150f441406c"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
 +Try: zypper install -C "debuginfo(build-id)=26402e3410056c24a36ef443501d36d2641cb0eb"
 +Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
 +Try: zypper install -C "debuginfo(build-id)=4f559b9379deccfa22ca487e146def8db19b6107"
 +Missing separate debuginfo for /usr/lib64/gerris/libtopics3D.so
 +Try: zypper install -C "debuginfo(build-id)=86bcfb7e07cb6b1dd9fa15cdce5b4f936597a106"
 +
 +warning: Corrupted shared library list
 +Missing separate debuginfo for
 +Try: zypper install -C "debuginfo(build-id)=c7669b037038fb0713eff04aae4a58871f404631"
 +
 +warning: Corrupted shared library list
 +Reading symbols from /usr/lib64/libgfs3D-1.3.so.2...(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/libgfs3D-1.3.so.2
 +Reading symbols from /usr/lib64/libgts-0.7.so.5...(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/libgts-0.7.so.5
 +Reading symbols from /lib64/libglib-2.0.so.0...Missing separate debuginfo for /lib64/libglib-2.0.so.0
 +Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libglib-2.0.so.0
 +Reading symbols from /lib64/libm.so.6...Missing separate debuginfo for /lib64/libm.so.6
 +Try: zypper install -C "debuginfo(build-id)=5ac64cd348d3581ec2a223ee70f42e73cad029cc"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libm.so.6
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0...Missing separate debuginfo for /usr/lib64/m pi/gcc/openmpi/lib64/libmpi.so.0
 +Try: zypper install -C "debuginfo(build-id)=92fde4dc891cdbfd56717d6e7ec36a6f4aa2a31a"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0
 +Reading symbols from /lib64/libpthread.so.0...Missing separate debuginfo for /lib64/libpthread.so.0
 +Try: zypper install -C "debuginfo(build-id)=e23cbc772e670af00bea9874f925e2e61afda713"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libpthread.so.0
 +Reading symbols from /lib64/libc.so.6...Missing separate debuginfo for /lib64/libc.so.6
 +Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libc.so.6
 +Reading symbols from /lib64/libgmodule-2.0.so.0...Missing separate debuginfo for /lib64/libgmodule-2.0.so.0
 +Try: zypper install -C "debuginfo(build-id)=691c1fb49f55b61d6fb9d852c1e45bf31070c968"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libgmodule-2.0.so.0
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0...Missing separate debuginfo for /usr/li b64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
 +Try: zypper install -C "debuginfo(build-id)=29f39043b1c76e1d6969f0b0b175a401a06e502c"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
 +Reading symbols from /lib64/libpcre.so.0...Missing separate debuginfo for /lib64/libpcre.so.0
 +Try: zypper install -C "debuginfo(build-id)=7d0cbd7e39faac70a4bcd0d67af1cec8f764a6a8"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libpcre.so.0
 +Reading symbols from /lib64/librt.so.1...Missing separate debuginfo for /lib64/librt.so.1
 +Try: zypper install -C "debuginfo(build-id)=e3e6773e84151cf7b70051b1e22f0254ede44f08"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/librt.so.1
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0...Missing separate debuginfo for /usr/li b64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
 +Try: zypper install -C "debuginfo(build-id)=1499fff7ece09deb87f0a902261be3576cbde3c2"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
 +Reading symbols from /lib64/ld-linux-x86-64.so.2...Missing separate debuginfo for /lib64/ld-linux-x86-64.so.2
 +Try: zypper install -C "debuginfo(build-id)=b1d398a5cb1609e7ac1c51a26588e87fc20f753c"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/ld-linux-x86-64.so.2
 +Reading symbols from /lib64/libdl.so.2...Missing separate debuginfo for /lib64/libdl.so.2
 +Try: zypper install -C "debuginfo(build-id)=9a8d0811525ec7a152dca9e109292adca81857c1"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libdl.so.2
 +Reading symbols from /lib64/libutil.so.1...Missing separate debuginfo for /lib64/libutil.so.1
 +Try: zypper install -C "debuginfo(build-id)=5751266e22e9f2cbca821b110e87ecd37e70e7b4"
 +(no debugging symbols found)...done.
 +Loaded symbols for /lib64/libutil.so.1
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so...Missing separate debugin fo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
 +Try: zypper install -C "debuginfo(build-id)=25b93b44c7fd7e72c41e420612362a6cb2949985"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=104134640094fca2fd5426b0701563fd4b28ad4a"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
 +Try: zypper install -C "debuginfo(build-id)=8c8456fad88d46693aff1255de3a96264ad05aa0"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
 +Try: zypper install -C "debuginfo(build-id)=ca47041d00b1b46225eaa1a23131adccfd743ea4"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
 +Try: zypper install -C "debuginfo(build-id)=2c083e1336ae3b9d74d1933ed9b9531e2e776cf2"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=ec544d770190052f4b90feb4c55bf8f69a1feb7d"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
 +Try: zypper install -C "debuginfo(build-id)=260fc9c133e905e57d79b0e3605befe631c1aec7"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
 +Try: zypper install -C "debuginfo(build-id)=5fb1d4dd9f47a3ff043ae76516e62ed091fca612"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
 +Try: zypper install -C "debuginfo(build-id)=ad0a31c3ba7fd44f88f80c068d293a9d7c664d0e"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=68263ec466fbd29f4d1efbc008e31301ca324b0f"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so...Missing separate debuginfo f or /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
 +Try: zypper install -C "debuginfo(build-id)=acd24af09910454519e83b8e015317ef76fff0bf"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
 +Try: zypper install -C "debuginfo(build-id)=c3ba7c1237f91dbe125fd4bfb480c25a981b845e"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=316df880c94eb69b9ff62486d3af0fdf99b3a584"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so...Missing separate debuginfo f or /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
 +Try: zypper install -C "debuginfo(build-id)=26187d03cdd941fed9ea27a8b974fa32c607e278"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
 +Try: zypper install -C "debuginfo(build-id)=97ad3de1a6593d8a7d491d6a687d4f9e83990abc"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so...Missing separate debuginf o for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
 +Try: zypper install -C "debuginfo(build-id)=0faa776e3ac158e25193330e494fa738cde2791f"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
 +Try: zypper install -C "debuginfo(build-id)=ab37174a7c071f220b248b8d047a502fcb8af2d7"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
 +Try: zypper install -C "debuginfo(build-id)=e380eca4000b35a84021c891bc7d5b9e79919566"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so...Missing separate debug info for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
 +Try: zypper install -C "debuginfo(build-id)=fc4c8c5e82df290ded5c31b98d04f2e8052a6204"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so...Missing separate debuginf o for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
 +Try: zypper install -C "debuginfo(build-id)=78c9b404918f873b0478522d19d1028309865ab5"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
 +Try: zypper install -C "debuginfo(build-id)=e858f53cfd31c5e090ddda5dba145d6aa21317a9"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
 +Try: zypper install -C "debuginfo(build-id)=f1779fa302f3e8f76555e14b90eae9d20a464c64"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
 +Try: zypper install -C "debuginfo(build-id)=d2b5b9126217a97fed2d1fcdc3fdc56662c76c1e"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=dd9c3fd18ec53ff040186974413fa714e0d14595"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
 +Try: zypper install -C "debuginfo(build-id)=7096d727d63a3e7e4d72481f7dddf323857b93c4"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
 +Try: zypper install -C "debuginfo(build-id)=5686c3b85d9c6f85b38ccac80e04dc1eba981a1d"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so...Missing separate debugin fo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
 +Try: zypper install -C "debuginfo(build-id)=8c24fa35a8984354b9381327e2e2dc2da1c5d9a2"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so...Missing separate debugi nfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
 +Try: zypper install -C "debuginfo(build-id)=2773c3c524f8635d70f4ff08855eb6e094274575"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
 +Try: zypper install -C "debuginfo(build-id)=2bd824902bb872b55024dad0261d1be23334ad96"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
 +Try: zypper install -C "debuginfo(build-id)=6397de58e423f648020148746c98dbab9749b9f0"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
 +Try: zypper install -C "debuginfo(build-id)=c4d011e296f92d65ea76471f1901311f33f63dec"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
 +Try: zypper install -C "debuginfo(build-id)=88373c4dadca1063131f581ee21d8c672671a4ce"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
 +Try: zypper install -C "debuginfo(build-id)=8464f81d8f801d9f30a92cd097a5224d2fac9e5b"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
 +Try: zypper install -C "debuginfo(build-id)=76728eccfc87527f96d2b1f87ec74095c81ddb0b"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
 +Try: zypper install -C "debuginfo(build-id)=3d1102b650cf8583aca37593de1d9c18d6099c77"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
 +Try: zypper install -C "debuginfo(build-id)=172c9d0fe932827db1e6b07910c3cf2a5288bd9b"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
 +Try: zypper install -C "debuginfo(build-id)=ffdc00b701595119aa282de493e4088c71a0ab53"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
 +Try: zypper install -C "debuginfo(build-id)=3071c6ccb164728e334021fb839e3dc7d32d17b8"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
 +Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
 +Try: zypper install -C "debuginfo(build-id)=6b43dd821c6413a7241cf7df46e03150f441406c"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
 +Try: zypper install -C "debuginfo(build-id)=26402e3410056c24a36ef443501d36d2641cb0eb"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
 +Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
 +Try: zypper install -C "debuginfo(build-id)=4f559b9379deccfa22ca487e146def8db19b6107"
 +(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
 +Reading symbols from /usr/lib64/gerris/libtopics3D.so...(no debugging symbols found)...done.
 +Loaded symbols for /usr/lib64/gerris/libtopics3D.so
 +
 +warning: Corrupted shared library list
 +Core was generated by `gerris3D -m parallel3D.gfs'.
 +Program terminated with signal 8, Arithmetic exception.
 +#0 0x00007fc83f471ecd in triBoxOverlap () from /usr/lib64/libgts-0.7.so.5
 +(gdb)
</pre> </pre>

Revision as of 03:21, 29 November 2011

Emily's Favourite Error Messages


This page is a place for storing error messages so I can compare and contrast.


Nicholson Canyon viscous3D parallel runs

I get the same message on both turbine and the new modelling computer and it occurs at the same position:


Modelling computer:

   step:       1 t:      0.50000000 dt:  5.000000e-01 cpu:     31.87250000 real:     34.53414900
   MAC projection        before     after       rate
   niter:    7
   residual.bias:   -7.007e-03 -5.369e-05
   residual.first:   7.016e-03  5.373e-05      2
   residual.second:  1.461e-02  7.277e-05    2.1
   residual.infty:   3.525e-02  7.272e-04    1.7
   Approximate projection
   niter:    3
   residual.bias:   -1.151e-04 -5.477e-05
   residual.first:   1.547e-04  5.481e-05    1.4
   residual.second:  5.344e-04  7.187e-05      2
   residual.infty:   2.145e-02  7.902e-04      3
   [NIWA-36410:06625] *** Process received signal ***
   [NIWA-36410:06625] Signal: Segmentation fault (11)
   [NIWA-36410:06625] Signal code: Address not mapped (1)
   [NIWA-36410:06625] Failing at address: 0x8
   [NIWA-36410:06625] [ 0] /lib64/libpthread.so.0(+0xf2d0) [0x7ffb7880b2d0]
   [NIWA-36410:06625] [ 1] /usr/lib64/libgfs3D-1.3.so.2(+0x4728e) [0x7ffb794a628e]
   [NIWA-36410:06625] [ 2] /usr/lib64/libgfs3D-1.3.so.2(+0x152a9) [0x7ffb794742a9]
   [NIWA-36410:06625] *** End of error message ***
   mpirun noticed that job rank 0 with PID 6619 on node NIWA-36410 exited on signal 15 (Terminated).
   7 additional processes aborted (not shown)

Turbine:

   step:       1 t:      0.50000000 dt:  5.000000e-01 cpu:     54.26500000 real:     57.84363200
   MAC projection        before     after       rate
   niter:    7
   residual.bias:   -7.007e-03 -5.369e-05
   residual.first:   7.016e-03  5.373e-05      2
   residual.second:  1.461e-02  7.277e-05    2.1
   residual.infty:   3.525e-02  7.272e-04    1.7
   Approximate projection
   niter:    3
   residual.bias:   -1.151e-04 -5.477e-05
   residual.first:   1.546e-04  5.481e-05    1.4
   residual.second:  5.338e-04  7.187e-05      2
   residual.infty:   2.141e-02  7.902e-04      3
   [rotor03:20387] *** Process received signal ***
   [rotor03:20387] Signal: Segmentation fault (11) 
   [rotor03:20387] Signal code: Address not mapped (1) 
   [rotor03:20387] Failing at address: 0x8 
   [rotor03:20387] [ 0] /lib64/libpthread.so.0 [0x7f64b72c0c00]
   [rotor03:20387] [ 1] /usr/lib64/libgfs3D-1.3.so.2 [0x7f64b8c0944f]
   [rotor03:20387] [ 2] /usr/lib64/libgfs3D-1.3.so.2 [0x7f64b8bdc609]
   [rotor03:20387] *** End of error message ***
   mpirun noticed that job rank 0 with PID 20381 on node rotor03 exited on signal 15 (Terminated).
   7 additional processes aborted (not shown)

The same code runs in series, I also tried with 2 and 4 cpus and it failed with the same error message (although at t=1 for 4 nodes and before writing any output for 2 nodes. It seemed to be consistent when it failed.


--- Gerris Debugging When running gerris debugging after the fact (i.e. as Stephane suggested doing the following)

% ulimit -c unlimited
% <rerun, crash should display "(core dumped)">
% ls core*
% gdb gerris3D core
gdb> where

I get:

#0  0x00007fd8198c228e in match_periodic_bc ()
   from /usr/lib64/libgfs3D-1.3.so.2
#1  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#2  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#3  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#4  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#5  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#6  0x00007fd8198902a9 in cell_traverse_boundary_leafs ()
   from /usr/lib64/libgfs3D-1.3.so.2
#7  0x00007fd8198c5faf in match_box_bc () from /usr/lib64/libgfs3D-1.3.so.2
#8  0x00007fd8198c8db3 in domain_foreach () from /usr/lib64/libgfs3D-1.3.so.2
#9  0x00007fd8198cde21 in gfs_domain_tag_droplets ()
   from /usr/lib64/libgfs3D-1.3.so.2
#10 0x00007fd8198ce0ae in gfs_domain_remove_droplets ()
   from /usr/lib64/libgfs3D-1.3.so.2
#11 0x00007fd8198d6b59 in gfs_remove_droplets_event ()
   from /usr/lib64/libgfs3D-1.3.so.2
#12 0x00007fd8198d2825 in gfs_event_do () from /usr/lib64/libgfs3D-1.3.so.2
#13 0x00007fd81965fcb7 in slist_container_foreach ()
   from /usr/lib64/libgts-0.7.so.5
#14 0x00007fd8198da97f in simulation_run () from /usr/lib64/libgfs3D-1.3.so.2
#15 0x00007fd8198dc2a8 in gfs_simulation_run ()
   from /usr/lib64/libgfs3D-1.3.so.2
#16 0x0000000000402d3f in main ()


Parallel runs of solid block scenario

The following was generated using the debugging suggestion above. This was running on a 8 core modelling computer. I also have trouble with this on turbine. It looks like it might be the topics module that causes this issue.

GNU gdb (GDB) SUSE (7.2-3.3)
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>...
Reading symbols from /usr/bin/gerris3D...(no debugging symbols found)...done.
[New Thread 8923]
Missing separate debuginfo for /usr/lib64/libgfs3D-1.3.so.2
Try: zypper install -C "debuginfo(build-id)=73a7126c1de17dbebbdedf735fcdf79ba81ff692"
Missing separate debuginfo for /usr/lib64/libgts-0.7.so.5
Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
Missing separate debuginfo for /lib64/libglib-2.0.so.0
Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
Missing separate debuginfo for /lib64/libm.so.6
Try: zypper install -C "debuginfo(build-id)=5ac64cd348d3581ec2a223ee70f42e73cad029cc"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0
Try: zypper install -C "debuginfo(build-id)=92fde4dc891cdbfd56717d6e7ec36a6f4aa2a31a"
Missing separate debuginfo for /lib64/libpthread.so.0
Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
Missing separate debuginfo for /lib64/libc.so.6
Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
Missing separate debuginfo for /lib64/libgmodule-2.0.so.0
Try: zypper install -C "debuginfo(build-id)=691c1fb49f55b61d6fb9d852c1e45bf31070c968"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
Try: zypper install -C "debuginfo(build-id)=29f39043b1c76e1d6969f0b0b175a401a06e502c"
Missing separate debuginfo for /lib64/libpcre.so.0
Try: zypper install -C "debuginfo(build-id)=7d0cbd7e39faac70a4bcd0d67af1cec8f764a6a8"
Missing separate debuginfo for /lib64/librt.so.1
Try: zypper install -C "debuginfo(build-id)=e3e6773e84151cf7b70051b1e22f0254ede44f08"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
Try: zypper install -C "debuginfo(build-id)=1499fff7ece09deb87f0a902261be3576cbde3c2"
Missing separate debuginfo for /lib64/ld-linux-x86-64.so.2
Try: zypper install -C "debuginfo(build-id)=b1d398a5cb1609e7ac1c51a26588e87fc20f753c"
Missing separate debuginfo for /lib64/libdl.so.2
Try: zypper install -C "debuginfo(build-id)=9a8d0811525ec7a152dca9e109292adca81857c1"
Missing separate debuginfo for /lib64/libutil.so.1
Try: zypper install -C "debuginfo(build-id)=5751266e22e9f2cbca821b110e87ecd37e70e7b4"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
Try: zypper install -C "debuginfo(build-id)=25b93b44c7fd7e72c41e420612362a6cb2949985"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
Try: zypper install -C "debuginfo(build-id)=104134640094fca2fd5426b0701563fd4b28ad4a"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
Try: zypper install -C "debuginfo(build-id)=8c8456fad88d46693aff1255de3a96264ad05aa0"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
Try: zypper install -C "debuginfo(build-id)=ca47041d00b1b46225eaa1a23131adccfd743ea4"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
Try: zypper install -C "debuginfo(build-id)=2c083e1336ae3b9d74d1933ed9b9531e2e776cf2"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
Try: zypper install -C "debuginfo(build-id)=ec544d770190052f4b90feb4c55bf8f69a1feb7d"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
Try: zypper install -C "debuginfo(build-id)=260fc9c133e905e57d79b0e3605befe631c1aec7"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
Try: zypper install -C "debuginfo(build-id)=5fb1d4dd9f47a3ff043ae76516e62ed091fca612"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
Try: zypper install -C "debuginfo(build-id)=ad0a31c3ba7fd44f88f80c068d293a9d7c664d0e"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
Try: zypper install -C "debuginfo(build-id)=68263ec466fbd29f4d1efbc008e31301ca324b0f"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
Try: zypper install -C "debuginfo(build-id)=acd24af09910454519e83b8e015317ef76fff0bf"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
Try: zypper install -C "debuginfo(build-id)=c3ba7c1237f91dbe125fd4bfb480c25a981b845e"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
Try: zypper install -C "debuginfo(build-id)=316df880c94eb69b9ff62486d3af0fdf99b3a584"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
Try: zypper install -C "debuginfo(build-id)=26187d03cdd941fed9ea27a8b974fa32c607e278"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
Try: zypper install -C "debuginfo(build-id)=97ad3de1a6593d8a7d491d6a687d4f9e83990abc"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
Try: zypper install -C "debuginfo(build-id)=0faa776e3ac158e25193330e494fa738cde2791f"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
Try: zypper install -C "debuginfo(build-id)=ab37174a7c071f220b248b8d047a502fcb8af2d7"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
Try: zypper install -C "debuginfo(build-id)=e380eca4000b35a84021c891bc7d5b9e79919566"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
Try: zypper install -C "debuginfo(build-id)=fc4c8c5e82df290ded5c31b98d04f2e8052a6204"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
Try: zypper install -C "debuginfo(build-id)=e858f53cfd31c5e090ddda5dba145d6aa21317a9"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
Try: zypper install -C "debuginfo(build-id)=f1779fa302f3e8f76555e14b90eae9d20a464c64"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
Try: zypper install -C "debuginfo(build-id)=d2b5b9126217a97fed2d1fcdc3fdc56662c76c1e"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
Try: zypper install -C "debuginfo(build-id)=dd9c3fd18ec53ff040186974413fa714e0d14595"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
Try: zypper install -C "debuginfo(build-id)=7096d727d63a3e7e4d72481f7dddf323857b93c4"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
Try: zypper install -C "debuginfo(build-id)=5686c3b85d9c6f85b38ccac80e04dc1eba981a1d"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
Try: zypper install -C "debuginfo(build-id)=8c24fa35a8984354b9381327e2e2dc2da1c5d9a2"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
Try: zypper install -C "debuginfo(build-id)=2773c3c524f8635d70f4ff08855eb6e094274575"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
Try: zypper install -C "debuginfo(build-id)=2bd824902bb872b55024dad0261d1be23334ad96"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
Try: zypper install -C "debuginfo(build-id)=6397de58e423f648020148746c98dbab9749b9f0"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
Try: zypper install -C "debuginfo(build-id)=c4d011e296f92d65ea76471f1901311f33f63dec"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
Try: zypper install -C "debuginfo(build-id)=88373c4dadca1063131f581ee21d8c672671a4ce"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
Try: zypper install -C "debuginfo(build-id)=8464f81d8f801d9f30a92cd097a5224d2fac9e5b"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
Try: zypper install -C "debuginfo(build-id)=76728eccfc87527f96d2b1f87ec74095c81ddb0b"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
Try: zypper install -C "debuginfo(build-id)=3d1102b650cf8583aca37593de1d9c18d6099c77"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
Try: zypper install -C "debuginfo(build-id)=172c9d0fe932827db1e6b07910c3cf2a5288bd9b"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
Try: zypper install -C "debuginfo(build-id)=ffdc00b701595119aa282de493e4088c71a0ab53"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
Try: zypper install -C "debuginfo(build-id)=6b43dd821c6413a7241cf7df46e03150f441406c"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
Try: zypper install -C "debuginfo(build-id)=26402e3410056c24a36ef443501d36d2641cb0eb"
Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
Try: zypper install -C "debuginfo(build-id)=4f559b9379deccfa22ca487e146def8db19b6107"
Missing separate debuginfo for /usr/lib64/gerris/libtopics3D.so
Try: zypper install -C "debuginfo(build-id)=86bcfb7e07cb6b1dd9fa15cdce5b4f936597a106"

warning: Corrupted shared library list
Missing separate debuginfo for
Try: zypper install -C "debuginfo(build-id)=c7669b037038fb0713eff04aae4a58871f404631"

warning: Corrupted shared library list
Reading symbols from /usr/lib64/libgfs3D-1.3.so.2...(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/libgfs3D-1.3.so.2
Reading symbols from /usr/lib64/libgts-0.7.so.5...(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/libgts-0.7.so.5
Reading symbols from /lib64/libglib-2.0.so.0...Missing separate debuginfo for /lib64/libglib-2.0.so.0
Try: zypper install -C "debuginfo(build-id)=67137e1a88a14d2341020d1368ec7736117d23dc"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libglib-2.0.so.0
Reading symbols from /lib64/libm.so.6...Missing separate debuginfo for /lib64/libm.so.6
Try: zypper install -C "debuginfo(build-id)=5ac64cd348d3581ec2a223ee70f42e73cad029cc"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libm.so.6
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0...Missing separate debuginfo for /usr/lib64/m pi/gcc/openmpi/lib64/libmpi.so.0
Try: zypper install -C "debuginfo(build-id)=92fde4dc891cdbfd56717d6e7ec36a6f4aa2a31a"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so.0
Reading symbols from /lib64/libpthread.so.0...Missing separate debuginfo for /lib64/libpthread.so.0
Try: zypper install -C "debuginfo(build-id)=e23cbc772e670af00bea9874f925e2e61afda713"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libpthread.so.0
Reading symbols from /lib64/libc.so.6...Missing separate debuginfo for /lib64/libc.so.6
Try: zypper install -C "debuginfo(build-id)=92ec8fe859846a62345f74696ab349721415587a"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libc.so.6
Reading symbols from /lib64/libgmodule-2.0.so.0...Missing separate debuginfo for /lib64/libgmodule-2.0.so.0
Try: zypper install -C "debuginfo(build-id)=691c1fb49f55b61d6fb9d852c1e45bf31070c968"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libgmodule-2.0.so.0
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0...Missing separate debuginfo for /usr/li b64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
Try: zypper install -C "debuginfo(build-id)=29f39043b1c76e1d6969f0b0b175a401a06e502c"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-pal.so.0
Reading symbols from /lib64/libpcre.so.0...Missing separate debuginfo for /lib64/libpcre.so.0
Try: zypper install -C "debuginfo(build-id)=7d0cbd7e39faac70a4bcd0d67af1cec8f764a6a8"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libpcre.so.0
Reading symbols from /lib64/librt.so.1...Missing separate debuginfo for /lib64/librt.so.1
Try: zypper install -C "debuginfo(build-id)=e3e6773e84151cf7b70051b1e22f0254ede44f08"
(no debugging symbols found)...done.
Loaded symbols for /lib64/librt.so.1
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0...Missing separate debuginfo for /usr/li b64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
Try: zypper install -C "debuginfo(build-id)=1499fff7ece09deb87f0a902261be3576cbde3c2"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libopen-rte.so.0
Reading symbols from /lib64/ld-linux-x86-64.so.2...Missing separate debuginfo for /lib64/ld-linux-x86-64.so.2
Try: zypper install -C "debuginfo(build-id)=b1d398a5cb1609e7ac1c51a26588e87fc20f753c"
(no debugging symbols found)...done.
Loaded symbols for /lib64/ld-linux-x86-64.so.2
Reading symbols from /lib64/libdl.so.2...Missing separate debuginfo for /lib64/libdl.so.2
Try: zypper install -C "debuginfo(build-id)=9a8d0811525ec7a152dca9e109292adca81857c1"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libdl.so.2
Reading symbols from /lib64/libutil.so.1...Missing separate debuginfo for /lib64/libutil.so.1
Try: zypper install -C "debuginfo(build-id)=5751266e22e9f2cbca821b110e87ecd37e70e7b4"
(no debugging symbols found)...done.
Loaded symbols for /lib64/libutil.so.1
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so...Missing separate debugin fo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
Try: zypper install -C "debuginfo(build-id)=25b93b44c7fd7e72c41e420612362a6cb2949985"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_paffinity_linux.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
Try: zypper install -C "debuginfo(build-id)=104134640094fca2fd5426b0701563fd4b28ad4a"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
Try: zypper install -C "debuginfo(build-id)=8c8456fad88d46693aff1255de3a96264ad05aa0"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ns_replica.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
Try: zypper install -C "debuginfo(build-id)=ca47041d00b1b46225eaa1a23131adccfd743ea4"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_hnp.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
Try: zypper install -C "debuginfo(build-id)=2c083e1336ae3b9d74d1933ed9b9531e2e776cf2"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_orted.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
Try: zypper install -C "debuginfo(build-id)=ec544d770190052f4b90feb4c55bf8f69a1feb7d"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_errmgr_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
Try: zypper install -C "debuginfo(build-id)=260fc9c133e905e57d79b0e3605befe631c1aec7"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rml_oob.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
Try: zypper install -C "debuginfo(build-id)=5fb1d4dd9f47a3ff043ae76516e62ed091fca612"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_oob_tcp.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
Try: zypper install -C "debuginfo(build-id)=ad0a31c3ba7fd44f88f80c068d293a9d7c664d0e"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_null.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
Try: zypper install -C "debuginfo(build-id)=68263ec466fbd29f4d1efbc008e31301ca324b0f"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so...Missing separate debuginfo f or /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
Try: zypper install -C "debuginfo(build-id)=acd24af09910454519e83b8e015317ef76fff0bf"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_gpr_replica.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
Try: zypper install -C "debuginfo(build-id)=c3ba7c1237f91dbe125fd4bfb480c25a981b845e"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_hostfile.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
Try: zypper install -C "debuginfo(build-id)=316df880c94eb69b9ff62486d3af0fdf99b3a584"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so...Missing separate debuginfo f or /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
Try: zypper install -C "debuginfo(build-id)=26187d03cdd941fed9ea27a8b974fa32c607e278"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rds_resfile.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so...Missing separate debuginfo  for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
Try: zypper install -C "debuginfo(build-id)=97ad3de1a6593d8a7d491d6a687d4f9e83990abc"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_dash_host.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so...Missing separate debuginf o for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
Try: zypper install -C "debuginfo(build-id)=0faa776e3ac158e25193330e494fa738cde2791f"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_gridengine.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so...Missing separate debuginfo  for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
Try: zypper install -C "debuginfo(build-id)=ab37174a7c071f220b248b8d047a502fcb8af2d7"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_localhost.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
Try: zypper install -C "debuginfo(build-id)=e380eca4000b35a84021c891bc7d5b9e79919566"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_ras_slurm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so...Missing separate debug info for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
Try: zypper install -C "debuginfo(build-id)=fc4c8c5e82df290ded5c31b98d04f2e8052a6204"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmaps_round_robin.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so...Missing separate debuginf o for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
Try: zypper install -C "debuginfo(build-id)=78c9b404918f873b0478522d19d1028309865ab5"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_gridengine.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
Try: zypper install -C "debuginfo(build-id)=bcbf6067e470c4219c688f291ee722764c9d20ee"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
Try: zypper install -C "debuginfo(build-id)=e858f53cfd31c5e090ddda5dba145d6aa21317a9"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_rsh.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
Try: zypper install -C "debuginfo(build-id)=f1779fa302f3e8f76555e14b90eae9d20a464c64"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pls_slurm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
Try: zypper install -C "debuginfo(build-id)=d2b5b9126217a97fed2d1fcdc3fdc56662c76c1e"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_odls_default.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
Try: zypper install -C "debuginfo(build-id)=dd9c3fd18ec53ff040186974413fa714e0d14595"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
Try: zypper install -C "debuginfo(build-id)=7096d727d63a3e7e4d72481f7dddf323857b93c4"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rmgr_urm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
Try: zypper install -C "debuginfo(build-id)=5686c3b85d9c6f85b38ccac80e04dc1eba981a1d"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_iof_proxy.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so...Missing separate debugin fo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
Try: zypper install -C "debuginfo(build-id)=8c24fa35a8984354b9381327e2e2dc2da1c5d9a2"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_basic.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so...Missing separate debugi nfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
Try: zypper install -C "debuginfo(build-id)=2773c3c524f8635d70f4ff08855eb6e094274575"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_allocator_bucket.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
Try: zypper install -C "debuginfo(build-id)=2bd824902bb872b55024dad0261d1be23334ad96"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_rcache_vma.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
Try: zypper install -C "debuginfo(build-id)=6397de58e423f648020148746c98dbab9749b9f0"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_rdma.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
Try: zypper install -C "debuginfo(build-id)=c4d011e296f92d65ea76471f1901311f33f63dec"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_mpool_sm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
Try: zypper install -C "debuginfo(build-id)=88373c4dadca1063131f581ee21d8c672671a4ce"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/libmca_common_sm.so.0
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
Try: zypper install -C "debuginfo(build-id)=8464f81d8f801d9f30a92cd097a5224d2fac9e5b"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_pml_ob1.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
Try: zypper install -C "debuginfo(build-id)=76728eccfc87527f96d2b1f87ec74095c81ddb0b"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_bml_r2.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so...Missing separate debuginfo for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
Try: zypper install -C "debuginfo(build-id)=3d1102b650cf8583aca37593de1d9c18d6099c77"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_self.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so...Missing separate debuginfo for /u sr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
Try: zypper install -C "debuginfo(build-id)=172c9d0fe932827db1e6b07910c3cf2a5288bd9b"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_sm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
Try: zypper install -C "debuginfo(build-id)=ffdc00b701595119aa282de493e4088c71a0ab53"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_btl_tcp.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
Try: zypper install -C "debuginfo(build-id)=3071c6ccb164728e334021fb839e3dc7d32d17b8"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_basic.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
Try: zypper install -C "debuginfo(build-id)=4fc1a2752f46d7ad70731ae052612aa67d6eb962"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_self.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so...Missing separate debuginfo for / usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
Try: zypper install -C "debuginfo(build-id)=6b43dd821c6413a7241cf7df46e03150f441406c"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_sm.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so...Missing separate debuginfo fo r /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
Try: zypper install -C "debuginfo(build-id)=26402e3410056c24a36ef443501d36d2641cb0eb"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_coll_tuned.so
Reading symbols from /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so...Missing separate debuginfo for  /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
Try: zypper install -C "debuginfo(build-id)=4f559b9379deccfa22ca487e146def8db19b6107"
(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/mpi/gcc/openmpi/lib64/openmpi/mca_osc_pt2pt.so
Reading symbols from /usr/lib64/gerris/libtopics3D.so...(no debugging symbols found)...done.
Loaded symbols for /usr/lib64/gerris/libtopics3D.so

warning: Corrupted shared library list
Core was generated by `gerris3D -m parallel3D.gfs'.
Program terminated with signal 8, Arithmetic exception.
#0  0x00007fc83f471ecd in triBoxOverlap () from /usr/lib64/libgts-0.7.so.5
(gdb)
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