# Bibliography

### From Gerris

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author = {F. Griessbaum and B. I. Moat and Y. Narita and M. J. Yelland and O. Klemm and M. Uematsu}, | author = {F. Griessbaum and B. I. Moat and Y. Narita and M. J. Yelland and O. Klemm and M. Uematsu}, |

## Revision as of 20:00, 29 July 2010

A non-exhaustive list of papers using Gerris and/or used when developing Gerris. Other relevant references can also be found on the user page of Stéphane Popinet.

## Contents |

# Gerris related

*S. Delaux, C. L. Stevens, S. Popinet* - **High-resolution computational fluid dynamics modelling of suspended shellfish structures**

- Environmental Fluid Mechanics , 2010
- Bibtex

*J. O’Callaghan, G. Rickard, S. Popinet, C. Stevens* - **The response of buoyant plumes to transient discharges investigated using an adaptive solver**

- Journal of Geophysical Research , 2010
- Bibtex

*F. Griessbaum, B. I. Moat, Y. Narita, M. J. Yelland, O. Klemm, M. Uematsu* - **Uncertainties in wind speed dependent CO2 transfer velocities due to airflow distortion at anemometer sites on ships**

- Atmos. Chem. Phys. (10):5123-5133, 2010
- Bibtex

*G. Tomar, D. Fuster, S. Zaleski, S. Popinet* - **Multiscale simulations of primary atomization using Gerris**

- Computers and Fluids , 2010
- Bibtex

*A. Bagué, D. Fuster, S. Popinet, R. Scardovelli, S. Zaleski* - **Instability growth rate of two-phase mixing layers from a linear eigenvalue problem and an initial value problem**

- Physics of Fluids , 2010
- Bibtex

*S. Popinet, R. M. Gorman, G. J. Rickard, H. L. Tolman* - **A quadtree-adaptive spectral wave model**

- Ocean Modelling 34:36-49, 2010
- Bibtex

*D. Fuster, G. Agbaglah, C. Josserand, S. Popinet, S. Zaleski* - **Numerical simulation of droplets, bubbles and waves: state of the art**

- Fluid dynamics research 41:065001, 2009
- Bibtex

*F. Griessbaum, A. Schmidt* - **Advanced tilt correction from flow distortion effects on turbulent CO2 fluxes in complex environments using large eddy simulation**

- Quarterly Journal of the Royal Meteorological Society 135:1603-1613, 2009
- Bibtex

*G. Rickard, J. O'Callaghan, S. Popinet* - **Numerical simulations of internal solitary waves interacting with uniform slopes using an adaptive model**

- Ocean Modelling 30:16-28, 2009
- Bibtex

*S. Popinet* - **An accurate adaptive solver for surface-tension-driven interfacial flows**

- Journal of Computational Physics 228:5838–5866, 2009
- Bibtex

*D. Fuster, A. Bague, T. Boeck, L. Le Moyne, A. Leboissetier, S. Popinet, P. Ray, S. Scardovelli, S. Zaleski* - **Simulation of primary atomization with an octree adaptive mesh refinement and VOF method**

- International Journal of Multiphase Flows 35(6):550-565, 2009
- Bibtex

*S. Afkhami, S. Zaleski, M. Bussmann* - **A mesh-dependent model for applying dynamic contact angles to VOF simulations**

- Journal of Computational Physics 228:5370–5389, 2009
- Bibtex

*S. Afkhami, M. Bussmann* - **Height functions for applying contact angles to 2D VOF simulations**

- International Journal for Numerical Methods in Fluids 57:453–472, 2008
- Bibtex

*T. Wiens* - **Sensing of Turbulent Flows Using Real-Time Acoustic Tomography**

- Proceedings of the New Zealand Acoustic Society Conference 2008, Auckland, November , 2008
- Bibtex

*Y. Zhou, D. McLaughlin, D. Entekhabi, G.H.C. Ng* - **An Ensemble Multiscale Filter for Large Nonlinear Data Assimilation Problems**

- Monthly Weather Review (136):678–698, 2008
- Bibtex

*L. J. Gordillo-Zavaleta* - **Self-similar and travelling wave solutions in surface-tension-driven thin planar films**

- Technical report, Universite Pierre et Marie Curie , June, 2007
- Bibtex

*C. J. Wu, L. Wang* - **Direct numerical simulation of self-propelled swimming of 3D bionic fish school**

- Computational Mechanics, Proceedings of ISCM 2007 , 2007
- Bibtex

- See also the corresponding fish tandem animation.

*N. Srinarayana, S.W. Armfield, W.X. Lin* - **Numerical simulation of free-fountains in a homogeneous fluid**

- Proceedings of the 16th Australasian Fluid Mechanics Conference , 2007
- Bibtex

*S. Popinet, G. Rickard* - **A tree-based solver for adaptive ocean modelling**

- Ocean Modelling (16):224-249, 2007
- Bibtex

*R. Msadek* - **Hydrodynamic tidal model of Cook Strait**

- Technical report, National Institute of Water and Atmospheric research , June, 2005
- Bibtex

*S. Popinet* - **Numerical modelling of fluid flow**

- Marsden Update (28), July, 2004
- Bibtex

*S. Popinet* - **Free Computational Fluid Dynamics**

- ClusterWorld 2(6), June, 2004
- Bibtex

*S. Popinet, M. Smith, C. Stevens* - **Experimental and numerical study of the turbulence characteristics of air flow around a research vessel**

- J. Ocean. Atm. Tech. 21(10):1574-1589, 2004
- Bibtex

*S. Popinet* - **Gerris: a tree-based adaptive solver for the incompressible Euler equations in complex geometries**

- J. Comput. Phys. 190(2):572-600, 2003
- Bibtex

*S. Popinet* - **Generic and accurate direct numerical simulation of interfacial and free-surface flows**

- Unpublished , 2001
- Bibtex

# Locally refined methods

*D. F. Martin* - **An adaptive cell-centered projection method for the incompressible Euler equations**

- PhD thesis, University of California , Berkeley, 1998
- Bibtex

*A. M. Khokhlov* - **Fully threaded tree algorithms for adaptive refinement fluid dynamics simulations**

- J. Comput. Phys. 143(2):519-543, 1998
- Bibtex

*Louis H. Howell, John B. Bell* - **An Adaptive Mesh Projection Method for Viscous Incompressible Flow**

- SIAM Journal on Scientific Computing 18(4):996-1013, 1997
- Bibtex

*M. L. Minion* - **A Projection Method for Locally Refined Grids**

- J. Comput. Phys. 127:158-177, 1996
- Bibtex

*D. Sidilkover, U. M. Ascher* - **A Multigrid Solver for the Steady State Navier-Stokes Equations Using The Pressure-Poisson Formulation**

- Comp. Appl. Math 14:21-35, 1995
- Bibtex

*W. J. Coirier* - **An Adaptively-Refined, Cartesian, Cell-Based Scheme for the Euler and Navier-Stokes Equations**

- PhD thesis, NASA Lewis Research Center , Cleveland, OH, USA, October, 1994
- Bibtex

*J. J. Quirk* - **A Cartesian Grid Approach with Hierarchical Refinement for Compressible Flows**

- Technical report, NASA Langley research center (TR-94-51), Hampton, VA, USA, 1994
- Bibtex

# Approximate projections

*D. L. Brown, R. Cortez, M. L. Minion* - **Accurate projection methods for the incompressible Navier-Stokes equations**

- J. Comput. Phys. 168:464-499, 2001
- Postscript Bibtex

*A. S. Almgren, J. B. Bell, W. Y. Crutchfield* - **Approximate Projection Methods: Part I. Inviscid Analysis**

- SIAM Journal on Scientific Computing 22(4):1139-1159, 2000
- Postscript Bibtex

*A. S. Almgren, J. B. Bell, P. Colella, L. H. Howell, M. L. Welcome* - **A Conservative Adaptive Projection Method for the Variable Density Incompressible Navier-Stokes Equations**

- J. Comput. Phys. 142:1-46, 1998
- Postscript Bibtex

*A. S. Almgren, J. B. Bell, W. G. Szymczak* - **A numerical method for the incompressible Navier-Stokes equations based on an approximate projection**

- SIAM J. Sci. Comput. 17(2):358-369, 1996
- Bibtex

*W. J. Rider* - **Approximate projection methods for incompressible flows: Implementation, variants and robustness**

- Technical report, Los Alamos National Laboratory (LA-UR-2000), 1995
- Postscript Bibtex

# Complex solid boundaries

*D. Calhoun* - **A Cartesian grid method for solving the streamfunction-vorticity equations in irregular geometries**

- PhD thesis, University of Washington , 1999
- Bibtex

*A. S. Almgren, J. B. Bell, P. Colella, T. Marthaler* - **A Cartesian Grid Projection Method for the Incompressible Euler Equations in Complex Geometries**

- SIAM J. Sci. Comp. 18(5):1289-1309, 1997
- Postscript Bibtex

*E. Y. Tau* - **A second-order projection method for the incompressible Navier-Stokes equations in arbitrary domain**

- J. Comput. Phys. 115:147-152, 1994
- Bibtex

# Central schemes

*A. Kurganov, E. Tadmor* - **New high-resolution central schemes for nonlinear conservation laws and convection-diffusion equations**

- unknown , 2000
- Postscript Bibtex

*R. Kupferman, E. Tadmor* - **A fast high-resolution second-order central scheme for incompressible flows**

- Proc. Nat. Acad. Sci. , 1997
- Postscript Bibtex

# Godunov methods

*Randall J. LeVeque* - **Balancing Source Terms and Flux Gradients in High-Resolution Godunov Methods: The Quasi-Steady Wave-Propagation Algorithm**

- J. Comput. Phys. 146(1):346-365, 1998
- Postscript Bibtex

*M. L. Minion* - **On the stability of Godunov-projection methods for incompressible flow**

- J. Comput. Phys. , 1996
- Postscript Bibtex

*J. B. Bell, D. L. Marcus* - **A second-order projection method for variable density flows**

- J. Comput. Phys. 101:334-348, 1992
- Bibtex

*P. Colella* - **A multidimensional second order Godunov scheme for conservation laws**

- J. Comput. Phys. 87:171-200, 1990
- Bibtex

*J. B. Bell, P. Colella, H. M. Glaz* - **A second-order projection method for the incompressible Navier-Stokes equations**

- J. Comput. Phys. 85:257-283, 1989
- Bibtex

# Interfacial flows

*D. Kothe* - **Perspective on Eulerian finite volume methods for incompressible interfacial flows**

- Free Surface Flows pp. 267-331, New York, 1999
- Postscript Bibtex

*E. Puckett, A. Almgren, J. Bell, D. Marcus, W. Rider* - **A high-order projection method for tracking fluid interfaces in variable density incompressible flows**

- J. Comput. Phys. 130:269-282, 1997
- Postscript Bibtex

*W. Rider, D. Kothe, S. Mosso, J. Cerutti, J. Hochstein* - **Accurate solution algorithms for incompressible multiphase flows**

- Proceedings of the 33rd AIAA Aerospace Science Meeting and Exhibit , 1995
- Postscript Bibtex

*D. Gueyffier, A. Nadim, J. Li, R. Scardovelli, S. Zaleski* - **Volume of fluid interface tracking with smoothed surface stress methods for three-dimensional flows**

- J. Comput. Phys. 152:423-456, 1998
- Bibtex

# Mesh generation

*M. J. Aftosmis, M. J. Berger, J. E. Melton* - **Robust and efficient cartesian mesh generation for component-based geometry**

*Bertram, M., Tricoche, X., Hagen, H.* - **Adaptive smooth scattered-data approximation for large-scale terrain visualization**

- Proceedings of the symposium on Data visualisation pp. 177-184, 2003
- Bibtex

# Graph partitioning

*R. Diekmann, R. Preis, F. Schlimbach, C. Walshaw* - **Shape-optimized mesh partitioning and load balancing for parallel adaptive FEM**

- Parallel Computing 26:1555-1581, 2000
- Postscript Bibtex