%section="Gerris related"

@Article{popinet2006,
  author = 	 {S. Popinet and G. Rickard},
  title = 	 {A tree-based solver for adaptive ocean modelling},
  journal = 	 {Ocean Modelling},
  year = 	 2006,
  number =       16,
  pages =        {224-249},
  url =          {http://gfs.sf.net/ocean.pdf}
}

@TechReport{msadek2005,
  author = 	 {R. Msadek},
  title = 	 {Hydrodynamic tidal model of Cook Strait},
  institution =  {National Institute of Water and Atmospheric research},
  year = 	 2005,
  month =        {June},
  url =          {http://gfs.sf.net/tides.pdf}
}

@Article{popinet2004c,
  author = 	 {S. Popinet},
  title = 	 {Numerical modelling of fluid flow},
  journal = 	 {Marsden Update},
  year = 	 2004,
  number =	 28,
  month =	 {July},
  url =          {http://www.rsnz.govt.nz/funding/marsden_fund/news28/Mars_28.pdf}
}

@Article{popinet2004b,
  author = 	 {S. Popinet},
  title = 	 {Free Computational Fluid Dynamics},
  journal = 	 {ClusterWorld},
  year = 	 2004,
  volume =	 2,
  number =	 6,
  month =	 {June},
  url =          {http://gfs.sf.net/clusterworld/clusterworld.pdf}
}

@Article{popinet2004,
  author = 	 {S. Popinet and M. Smith and C. Stevens},
  title = 	 {Experimental and numerical study of the turbulence characteristics of air flow around a research vessel},
  journal =      {J. Ocean. Atm. Tech.},
  year = 	 2004,
  volume =       21,
  number =       10,
  pages =        {1574-1589},
  url =          {http://gfs.sf.net/tangaroa.pdf}
}

@Article{popinet2003,
  author = 	 {S. Popinet},
  title = 	 {Gerris: a tree-based adaptive solver for the incompressible Euler equations in complex geometries},
  journal = 	 {J. Comput. Phys.},
  year = 	 2003,
  volume =	 190,
  number =	 2,
  pages =	 {572-600},
  url =          {http://gfs.sf.net/gerris.pdf}
}

@Unpublished{popinet2001,
  author = 	 {S. Popinet},
  title = 	 {Generic and accurate direct numerical simulation of interfacial and free-surface flows},
  note = 	 {Marsden Fund research proposal},
  year = 	 2001,
  url =          {marsden.pdf}
}

%section="Locally refined methods"

@PhdThesis{martin98,
  author = 	 {D. F. Martin},
  title = 	 {An adaptive cell-centered projection method for the incompressible Euler equations},
  school = 	 {University of California},
  year = 	 1998,
  address =	 {Berkeley},
  local_url =    {martin_thesis98.ps.gz},
  url =          {http://seesar.lbl.gov/anag/staff/martin/Thesis.html}
}

@Article{khokhlov98,
  author = 	 {A. M. Khokhlov},
  title = 	 {Fully threaded tree algorithms for adaptive refinement fluid dynamics simulations},
  journal = 	 {J. Comput. Phys.},
  year = 	 1998,
  volume =	 143,
  number =	 2,
  pages =	 {519-543},
  local_url =    {khokhlov/ftt.ps.gz}
}

@Article{howell97,
  author = 	 {Louis H. Howell and John B. Bell},
  title = 	 {An Adaptive Mesh Projection Method for Viscous Incompressible Flow},
  journal = 	 {SIAM Journal on Scientific Computing},
  year = 	 1997,
  volume =	 18,
  number =	 4,
  pages =	 {996-1013},
  url =          {http://citeseer.ist.psu.edu/44620.html},
  local_url =    {howell97.ps.gz}
}

@Article{minion96,
  author = 	 {M. L. Minion},
  title = 	 {A Projection Method for Locally Refined Grids},
  journal = 	 {J. Comput. Phys.},
  volume =       127,
  pages =        {158-177},
  year = 	 1996,
  url =          {http://citeseer.ist.psu.edu/minion96projection.html},
  local_url =    {minion96.ps.gz}
}

@Article{sidilkover95,
  author = 	 {D. Sidilkover and U. M. Ascher},
  title = 	 {A Multigrid Solver for the Steady State Navier-Stokes Equations Using The Pressure-Poisson Formulation},
  journal = 	 {Comp. Appl. Math},
  year = 	 1995,
  volume =	 14,
  pages =	 {21-35},
  url =          {http://citeseer.ist.psu.edu/sidilkover95multigrid.html},
  local_url =    {sidilkover95.ps.gz}
}

@PhdThesis{coirier94,
  author = 	 {W. J. Coirier},
  title = 	 {An Adaptively-Refined, Cartesian, Cell-Based Scheme for the Euler and Navier-Stokes Equations},
  school = 	 {NASA Lewis Research Center},
  year = 	 1994,
  address =	 {Cleveland, OH, USA},
  month =	 {October},
  url =          {http://citeseer.ist.psu.edu/coirier94adaptivelyrefined.html},
  local_url =    {coirier94.ps.gz}
}

@TechReport{quirk94,
  author = 	 {J. J. Quirk},
  title = 	 {A Cartesian Grid Approach with Hierarchical Refinement for Compressible Flows},
  institution =  {NASA Langley research center},
  year = 	 1994,
  number =	 {TR-94-51},
  address =	 {Hampton, VA, USA},
  url =          {http://citeseer.ist.psu.edu/james94cartesian.html},
  local_url =    {quirk94.ps.gz}
}

%section="Approximate projections"

@Article{brown2001,
  author = 	 {D. L. Brown and R. Cortez and M. L. Minion},
  title = 	 {Accurate projection methods for the incompressible Navier-Stokes equations},
  journal = 	 {J. Comput. Phys.},
  year = 	 2001,
  volume =	 168,
  pages =	 {464-499},
  url =          {http://www.amath.unc.edu/Faculty/minion/pubs/pubs.html},
  local_url =    {brown2001.ps.gz}
}

@Article{almgren2000,
  author = 	 {A. S. Almgren and J. B. Bell and W. Y. Crutchfield},
  title = 	 {Approximate Projection Methods: Part I. Inviscid Analysis},
  journal = 	 {SIAM Journal on Scientific Computing},
  year = 	 2000,
  volume =	 22,
  number =	 4,
  pages =	 {1139-1159},
  local_url =    {almgren2.ps.gz}
}

@Article{almgren98,
  author = 	 {A. S. Almgren and J. B. Bell and P. Colella and L. H. Howell and M. L. Welcome},
  title = 	 {A Conservative Adaptive Projection Method for the Variable Density Incompressible Navier-Stokes Equations},
  journal = 	 {J. Comput. Phys.},
  year = 	 1998,
  volume =	 142,
  pages =	 {1-46},
  url =          {http://seesar.lbl.gov/ccse/Publications/almgren/abchw96/paper.ps.gz},
  local_url =    {almgren1.ps.gz}
}

@Article{almgren96,
  author = 	 {A. S. Almgren and J. B. Bell and W. G. Szymczak},
  title = 	 {A numerical method for the incompressible Navier-Stokes equations based on an approximate projection},
  journal = 	 {SIAM J. Sci. Comput.},
  year = 	 1996,
  volume =	 17,
  number =	 2,
  pages  =       {358-369}
}

@TechReport{rider95,
  author = 	 {W. J. Rider},
  title = 	 {Approximate projection methods for incompressible flows: Implementation, variants and robustness},
  institution =  {Los Alamos National Laboratory},
  year = 	 1995,
  number =	 {LA-UR-2000},
  local_url =    {rider95.ps.gz},
  url =          {http://www-xdiv.lanl.gov/XHM/personnel/wjr/Web_papers/proj/proj.ps.Z}
}

%section="Complex solid boundaries"

@PhdThesis{calhoun99,
  author = 	 {D. Calhoun},
  title = 	 {A Cartesian grid method for solving the streamfunction-vorticity equations in irregular geometries},
  school = 	 {University of Washington},
  year = 	 1999,
  url =          {ftp://amath.washington.edu/pub/rjl/students/calhoun:thesis.ps.gz}
}

@Article{almgren97,
  author = 	 {A. S. Almgren and J. B. Bell and P. Colella and T. Marthaler},
  title = 	 {A Cartesian Grid Projection Method for the Incompressible Euler Equations in Complex Geometries},
  journal = 	 {SIAM J. Sci. Comp.},
  year = 	 1997,
  volume =	 18,
  number =	 5,
  pages =        {1289-1309},
  url =          {http://seesar.lbl.gov/ccse/Publications/almgren/abcm.sisc/paper.ps.gz},
  local_url =    {almgren.ps.gz}
}

@Article{tau94,
  author = 	 {E. Y. Tau},
  title = 	 {A second-order projection method for the incompressible Navier-Stokes equations in arbitrary domain},
  journal = 	 {J. Comput. Phys.},
  year = 	 1994,
  volume =	 115,
  pages =	 {147-152}
}

%section="Central schemes"

@Article{kurganov2000,
  author = 	 {A. Kurganov and E. Tadmor},
  title = 	 {New high-resolution central schemes for nonlinear conservation laws and convection-diffusion equations},
  journal = 	 {unknown},
  year = 	 2000,
  url =          {http://citeseer.ist.psu.edu/136349.html},
  local_url =    {kurganov2000.ps.gz}
}

@Article{kupferman97,
  author = 	 {R. Kupferman and E. Tadmor},
  title = 	 {A fast high-resolution second-order central scheme for incompressible flows},
  journal = 	 {Proc. Nat. Acad. Sci.},
  year = 	 1997,
  url =          {http://citeseer.ist.psu.edu/kupferman97fast.html},
  local_url =    {kupferman97.ps.gz}
}

%section="Godunov methods"

@Article{leveque98,
  author = 	 {Randall J. LeVeque},
  title = 	 {Balancing Source Terms and Flux Gradients in High-Resolution Godunov Methods: The Quasi-Steady Wave-Propagation Algorithm},
  journal = 	 {J. Comput. Phys.},
  year = 	 1998,
  volume =	 146,
  number =	 1,
  pages =	 {346-365},
  url =          {http://citeseer.ist.psu.edu/leveque98balancing.html},
  local_url =    {leveque98.ps.gz}
}

@Article{minion96-2,
  author = 	 {M. L. Minion},
  title = 	 {On the stability of Godunov-projection methods for incompressible flow},
  journal = 	 {J. Comput. Phys.},
  year = 	 {1996},
  url =          {http://citeseer.ist.psu.edu/minion96stability.html},
  local_url =    {minion96-2.ps.gz}
}

@Article{bell92,
  author = 	 {J. B. Bell and D. L. Marcus},
  title = 	 {A second-order projection method for variable density flows},
  journal = 	 {J. Comput. Phys.},
  year = 	 1992,
  volume =	 101,
  pages =	 {334-348}
}

@Article{colella90,
  author = 	 {P. Colella},
  title = 	 {A multidimensional second order Godunov scheme for conservation laws},
  journal = 	 {J. Comput. Phys.},
  year = 	 1990,
  volume =	 87,
  pages =	 {171-200}
}

@Article{bell89,
  author = 	 {J. B. Bell and P. Colella and H. M. Glaz},
  title = 	 {A second-order projection method for the incompressible Navier-Stokes equations},
  journal = 	 {J. Comput. Phys.},
  year = 	 1989,
  volume =	 85,
  pages =	 {257-283}
}

%section="Interfacial flows"

@InBook{kothe99,
  author =	 {D. Kothe},
  editor =	 {H. Kuhlmann and H. Rath},
  title = 	 {Perspective on Eulerian finite volume methods for incompressible interfacial flows},
  chapter = 	 {Free Surface Flows},
  publisher = 	 {Springer-Verlag},
  year = 	 1999,
  address =	 {New York},
  pages =	 {267-331},
  url =          {http://citeseer.ist.psu.edu/kothe99perspective.html},
  local_url =    {kothe99.ps.gz}
}

@Article{puckett97,
  author = 	 {E. Puckett and A. Almgren and J. Bell and D. Marcus and W. Rider},
  title = 	 {A high-order projection method for tracking fluid interfaces in variable density incompressible flows},
  journal = 	 {J. Comput. Phys.},
  year = 	 1997,
  volume =	 130,
  pages =	 {269-282},
  url =          {http://citeseer.ist.psu.edu/293459.html},
  local_url =    {puckett97.ps.gz}
}

@InProceedings{rider94,
  author = 	 {W. Rider and D. Kothe and S. Mosso and J. Cerutti and J. Hochstein},
  title = 	 {Accurate solution algorithms for incompressible multiphase flows},
  booktitle = 	 {Proceedings of the 33rd AIAA Aerospace Science Meeting and Exhibit},
  year = 	 1995,
  url =          {http://citeseer.ist.psu.edu/rider94accurate.html},
  local_url =    {rider94.ps.gz}
}

@Article{gueyffier98,
  author = 	 {D. Gueyffier and A. Nadim and J. Li and
		  R. Scardovelli and S. Zaleski},
  title = 	 {Volume of fluid interface tracking with smoothed surface stress methods for three-dimensional flows},
  year = 	 1998,
  volume =       152,
  pages =        {423-456},
  journal =      {J. Comput. Phys.},
  url =          {http://www.math.vt.edu/people/jie/Publications/plic3d.pdf}
}

%section="Mesh generation"

@TechReport{aftosmis,
  author = 	 {M. J. Aftosmis and M. J. Berger and J. E. Melton},
  title = 	 {Robust and efficient cartesian mesh generation for component-based geometry},
  institution =  {U.S. Air Force Wright Laboratory},
  number =       {AIAA-97-0196},
  year = 	 1997,
  url =          {http://www.nas.nasa.gov/~aftosmis/publications/AIAA-97-0196.pdf},
  local_url =    {aftosmis.pdf}
}

%section="Graph partitioning

@Article{diekmann00,
  author = 	 {R. Diekmann and R. Preis and F. Schlimbach and C. Walshaw},
  title = 	 {Shape-optimized mesh partitioning and load balancing for parallel adaptive FEM},
  journal = 	 {Parallel Computing},
  year = 	 2000,
  volume =	 26,
  pages =	 {1555-1581},
  url =          {http://www.uni-paderborn.de/cs/ag-monien/PUBLICATIONS/POSTSCRIPTS/DPSW99.parco.ps.gz},
  local_url =    {diekmann00shapeoptimized.ps.gz}
}